Tag Archives: research

Computer vision saves lives

It is one of the last areas of pathology testing to be automated: diagnosing which strain of bacteria is contained in potentially infected samples such as urine, sputum, wound swabs and fecal samples.

And doing it faster could save lives, allowing more rapid diagnosis of infections and early choice of the right line of treatment.

South Australian company LBT Innovations Ltd has worked with the University of Adelaide to develop an automated tool for diagnosing infections. Known as APAS – Automated Plate Assessment System – the technology incorporates computer vision to hasten the time required to detect infections in samples from patients.

“APAS accurately captures, reads and interprets bacterial cultures significantly faster than a trained scientist,” says LBT Innovations CEO Lusia Guthrie.

“Once incorporated into pathology services, we anticipate this technology will create significant cost reductions and save lives.”

After conducting clinical trials of APAS with more than 10,000 patient samples in Australia and USA, LBT Innovations is submitting the technology to the US Food and Drug Administration for approval as a diagnostic tool.

Improving old technology

Although over 130 years old, the use of gel plates to grow and identify bacteria still sits at the heart of modern diagnostic services.

For example, if you have a suspected urinary tract infection, a small sample of your urine will be smeared over a plate of solid gel. After incubation, a scientist examines the plate to classify any bacteria that have grown. Appropriate drug treatment can then be selected. The whole process takes 3–4 days, sometimes up to an entire week.

“Although around 70% of cultured plates are actually negative for bacteria, it typically takes a whole shift of human workers to sort through which ones need further analysis,” Guthrie says.

“APAS will significantly reduce this sample processing time.”

Cutting time from the analytical process will have an impact through reducing labour costs, allowing patients shorter lengths of stay in hospitals and freeing up microbiologists to focus on positive samples that require immediate specialist attention.

“We’re currently conducting market research to calculate the impact of this in dollar terms,” says Guthrie.

Industry and university collaboration

LBT Innovations worked with University of Adelaide’s Australian Centre for Visual Technologies (ACVT) to develop the plate reading capability in APAS.

“APAS consists of an image capture system linked to a computer loaded with algorithms that allow the plates to be categorised based on their appearance,” explains Professor Anton Van Den Hengel, Director at ACVT.

“One of the keys to successfully developing this technology has been to embed our engineer Rhys Hill within the LBT Innovations offices for the duration of the project.”

“With clear communication and a strong working relationship, it’s been a collaborative process of technology development,” says Van Den Hengel.

The intellectual property associated with APAS is fully owned by LBT Innovations.

Market for better, faster diagnostics

The latest clinical tests show that APAS algorithms are working for diagnosis of urinary cultures, with over 98% accuracy in detecting bacterial growth on plates.

Urinary tract infections are estimated to affect 150 million people each year globally, and the societal costs – including health care and time missed from work – are approximately US$3.5 billion per year in the USA alone.

Other samples that require plate culture and analysis for diagnosis include stool (bowel infections), sputum (respiratory tract infections), wound swabs (skin and tissue infections) and blood (septicaemia).

LBT Innovations plans to expand APAS testing for approval in all these fields. The company estimates there are 27,000 laboratories globally that can immediately benefit from APAS. The largest of these facilities process about 4000 plate samples every day.

“Laboratories are under pressure to process more samples and to do it faster, despite limits on budgets and human resources,” explains Guthrie.

“Once it’s approved, we plan to launch APAS in Australia and then roll it out into the USA, Canada, UK and Europe.”

LBT Innovations created a joint venture with German engineering company Hettich AG to fully develop commercial products that incorporate APAS technology with sophisticated plate-handling robotics.

– Sarah Keenihan

Innovation and Science on Turnbull agenda

Prime Minister Malcolm Turnbull recently announced the creation of a National Innovation and Science Agenda which includes funding, tax incentives and a strong focus on education initiatives to up the ante for Australia in terms of its innovation output.

The policy comes off the back of increased push since the Prime Minister gained office on the need to position Australia more strongly in the global economy and to facilitate a rapid move from traditional income from resources and manufacturing to one based on ‘ideas and entrepreneurship’.

Early announcements include:

  • $8 million in a network of incubators helping start-ups get the resources, knowledge and networks they need to take their ideas to the world
  • New arrangements to encourage collaboration between researchers and industry, including streamlining and refocussing a greater proportion of research block grant funding toward collaboration, with an addition $127 million in funding
  • Over 10 years: $520 million for the Australian Synchrotron, $294 million for the Square Kilometre Array, and $1.5 billion for the National Collaborative Research Infrastructure Strategy (NCRIS)
  • A $36 million Global Innovation Strategy to support businesses and researchers to collaborate with their global counterparts on research with landing pads established for Australian entrepreneurs and startups in Tel Aviv, Silicon Valley and three other key locations
  • $99 million investment in programmes to boost digital literacy and skills in science, technology, engineering and mathematics (STEM) amongst young Australians
  • $13 million to increasing opportunities for women in research, STEM industries, startups and entrepreneurial firms

The Minister for Industry, Innovation and Science, Christopher Pyne, said: “The release of the Agenda is just the beginning. The next step will be a national discussion around this new way of thinking and doing, and the importance of innovation and science to our future.

“We will highlight the successes to date and inspire all Australians to be involved in shaping our future and harnessing the potential of our ideas,” Mr Pyne said.

More on this to come.

– Heather Catchpole

Women engineers kick-start STEMM

Monash University’s Faculty of Engineering recently hosted the inaugural meeting of the Future Women Leaders Conference. The two-day workshop, held on the 26–27 November 2015 at the university’s Clayton campus in Victoria, was attended by around 50 women engineers from across Australia, New Zealand and Malaysia.

The workshop seeks to narrow the gender gap and improve gender diversity among engineering researchers, by providing support and practical information to female post-doctorates, lecturers and PhD candidates working in the engineering sector on how to manage the pressures faced by female academic engineers.

“The Future Women Leaders Conference is the first of its kind,” says Professor Ana Deletic, Associate Dean of Research at the Faculty of Engineering at Monash.

“The focus is on inspiring women in engineering to pursue an academic career, as well as providing opportunity for them to learn from the success of other female engineers.“

Gender diversity is still a major challenge for the science, technology, engineering, mathematics and medicine (STEMM) disciplines in Australia. This is particularly true for engineering, where, according the Workplace Gender Equality Agency (WGEA) report: A strategy for inclusiveness, well-being and diversity in the engineering workplace, women make up less than 12% of the workforce.

The majority of the workshop’s attendees are post-doctoral researchers seeking to transition to an academic position. This is a critical time in the life of female researcher engineers – at this point the gender gap widens significantly.

“We’re truly excited about this gathering – we see it as a fundamental step in increasing diversity in engineering,” says Professor Karen Hapgood, Head of Department for Chemical Engineering at Monash University and co-chair of the workshop with Deletic.

“The group is likely to form a peer mentoring network as a result of this event, which will provide valuable ongoing support for attendees. Engineering research is a highly competitive field, so this kind of support is particularly beneficial.”

The workshop, which featured inspirational stories from successful women engineers from across the country, including Monash Provost and Senior Vice-President Professor Edwina Cornish and Dr Leonie Walsh from The Office of the Lead Scientist in Victoria, sought to address the gender gap by providing valuable insights in to the challenges faced by women in engineering.

The networking element of the workshop, according to Deletic, was particularly valuable. “Many attendees had not met other people in their situation, and were eager to talk through the common challenges they face,” says Deletic.

Monash University, together with another 32 Australian institutions, is also taking part in the Science in Australia Gender Equity pilot. Launched on 16 September 2015, the pilot is an initiative of the Australian Academy of Science in partnership with the Australian Academy of Technological Sciences and Engineering that seeks to improve gender equity practices, representation and retention in STEMM.

– Carl Williams

Annual honorific awards

Scientists who are leading the world on solar energy efficiency, helping to develop one-shot flu vaccines, and making portable biosensors to detect viruses are among the winners of the Australian Academy of Science’s annual honorific awards.

Each year the Academy presents awards to recognise scientific excellence, to researchers in the early stage of their careers through to those who have made life-long achievements.

This year’s announcement includes 17 award winners across astronomy, nanoscience, mathematics, chemistry, physics, environmental science and human health.

Professor Martin Green, sometimes known as the “father of photovoltaics”, has won the prestigious Ian Wark Medal and Lecture for his world-record breaking work improving solar efficiency.

annual honorific awards

Professor Martin Green

Dr Jane Elith and Associate Professor Cyrille Boyer, who recently won awards in the Prime Minister’s Prizes for Science, will be the recipients of this year’s Fenner and Le Févre prizes.

annual honorific awards

Dr Jane Elith

annual honorific awards

Associate Professor Cyrille Boyer

The Academy President, Professor Andrew Holmes congratulated all the award winners for their work.

“These scientists are simply inspirational. They are working at the leading edges of their fields and of human knowledge, and they are developing innovations that will change and improve our society, our economy and our health,” says Holmes.

“This list of winners represents the best of Australia’s leading and emerging scientists; from researchers doing fundamental research to those building next generation technologies,” says Holmes.

The awards will be formally presented at the Academy’s annual three day celebration of Australian science, Science at the Shine Dome, in Canberra in May 2016.

Read more about the awardees and their research here.

This article was shared in a media release by the Australian Academy of Science on 23 November 2015. Featured image above: Aerial Shine Dome May 2015 credit Adi Chopra.

Small scale, big consequences

The nanoscale is so tiny it’s almost beyond comprehension. Too small for detection by the human eye, and not even discernible by most laboratory microscopes, it refers to measurements in the range of 1–100 billionths of a metre. The nanoscale is the level at which atoms and molecules come together to form structured materials.

The Nanochemistry Research Institute — NRI — conducts fundamental and applied research to understand, model and tailor materials at the nanoscale. It brings together scientists – with expertise in chemistry, engineering, computer simulations, materials and polymers – and external collaborators to generate practical applications in health, energy, environmental management, industry and exploration. These include new tests for cancer, and safer approaches to oil and gas transportation. Research ranges from government-funded exploratory science to confidential industry projects.


The NRI hosts research groups with specialist expertise in the chemical formation of minerals and other materials. “To understand minerals, it’s often important to know what is going on at the level of atoms,” explains Julian Gale, John Curtin Distinguished Professor in Computational Chemistry and former Acting Director of the NRI. “To do this, we use virtual observation – watching how atoms interact at the nanoscale – and modelling, where we simulate the behaviour of atoms on a computer.”

The mineral calcium carbonate is produced through biomineralisation by some marine invertebrates. “If we understand the chemistry that leads to the formation of carbonates in the environment, then we can look at how factors such as ocean temperature and pH can lead to the loss of minerals that are a vital component of coral reefs,” says Gale.

This approach could be used to build an understanding of how minerals are produced biologically, potentially leading to medical and technological benefits, including applications in bone growth and healing, or even kidney stone prevention and treatment.

Gale anticipates that a better understanding of mineral geochemistry may also shed light on how and where metals are distributed. “If you understand the chemistry of gold in solution and how deposits form, you might have a better idea where to look for the next gold mine,” he explains.

There are also environmental implications. “Formation of carbonate minerals, especially magnesium carbonate and its hydrates, has been proposed as a means of trapping atmospheric carbon in a stable solid state through a process known as geosequestration. We work with colleagues in the USA to understand how such carbonates form,” says Gale.

Minerals science is also relevant in industrial settings. Calcium carbonate scaling reduces flow rates in pipes and other structures in contact with water. “As an example, the membranes used for reverse osmosis in water desalination – a water purification technology that uses a semipermeable membrane to remove salt and other minerals from saline water – can trigger the formation of calcium carbonate,” explains Gale. “This results in partial blockage of water flow through the membrane, and reduced efficiency of the desalination process.”

A long-term aim of research in this area is to design water membranes that prevent these blockages. There are also potential applications in the oil industry, where barium sulphate (barite) build-up reduces the flow in pipes, and traps dangerous radioactive elements such as radium.

Another problem for exploration companies is the formation of hydrates of methane and other low molecular weight hydrocarbon molecules. These can block pipelines and processing equipment during oil and gas transportation and operations, which results in serious safety and flow assurance issues. Materials chemist Associate Professor Xia Lou leads a large research group in the Department of Chemical Engineering that is developing low-dose gas hydrates inhibitors to prevent hydrate formation. “We also develop nanomaterials for the removal of organic contaminants in water, and nanosensors to detect or extract heavy metals,” she says.

“To understand minerals, it’s often important to know what is going on at the level of the atom.”


The capacity to control how molecules come together and then disassociate offers tantalising opportunities for product development, particularly in food science, drug delivery and cosmetics. In the Department of Chemistry, Professor Mark Ogden conducts nanoscale research looking at hydrogels, or networks of polymeric materials suspended in water.

“We study the 3D structure of hydrogels using the Institute’s scanning probe microscope,” says Ogden. “The technique involves running a sharp tip over the surface of the material. It provides an image of the topography of the surface, but we can also measure how hard, soft or sticky the surface is.” Ogden is developing methods for watching hydrogels grow and fall apart through heating and cooling. “We have the capability to do that sort of imaging now, and this in situ approach is quite rare around the world,” he says.

Ogden also conducts chemical research with a group of metals known as lanthanoids, which are rare-earth elements. His recent work, in collaboration with the Australian Nuclear Science and Technology Organisation (ANSTO), discovered unique elongated nanoscale structures.

“We’ve identified lanthanoid clusters that can emit UV light and have magnetic properties,” explains Ogden. “Some of these can form single molecule magnets. A key outcome will be to link cluster size and shape to these functional properties.” This may facilitate guided production of magnetic and light-emitting materials for use in sensing and imaging technologies.

“If you understand the chemistry of gold … then you might have a better idea of where to start looking for the next gold mine.”


The NRI is working across several areas of chemistry and engineering to develop nanoscale tools for detecting and treating health conditions. Professor Damien Arrigan applies a nanoscale electrochemical approach to detecting biological molecules, also known as biosensing. He and his Department of Chemistry colleagues work at the precise junction between layered oil and water.

“We make oil/water interfaces using membranes with nanopores, some as small as 15 nanometres,” he says. “This scale delivers the degree of sensitivity we’re after.” The scientists measure the passage of electrical currents across the tiny interfaces and detect protein, which absorbs at the boundary between the two liquids. “As long as we know a protein’s isoelectric point – that is, the pH at which it carries no electrical charge – we can measure its concentration,” he explains.

The technique enables the scientists to detect proteins at nanomolar (10−6 mol/m3) concentrations, but they hope to shift the sensitivity to the picomolar (10−9 mol/m3) range – a level of detection a thousand times more sensitive and not possible with many existing protein assessments. Further refinement may also incorporate markers to select for proteins of interest. “What we’d like to do one day is measure specific proteins in biological fluids like saliva, tears or serum,” says Arrigan.

The team’s long-term vision is to develop highly sensitive point-of-need measurements to guide treatments – for example, testing kits for paramedics to detect markers released after a heart attack so that appropriate treatment can be immediately applied.

Also in the Department of Chemistry, Dr Max Massi is developing biosensing tools to look at the health of living tissues. His approach relies on tracking the location and luminescence of constructed molecules in cells. “We synthesise new compounds based on heavy metals that have luminescent properties,” explains Massi. “Then we feed the compounds to cells, and look to see where they accumulate and how they glow.”

The team synthesises libraries of designer chemicals for their trials. “We know what properties we’re after – luminescence, biological compatibility and the ability to go to the part of the cell we want,” says Massi.

For example, compounds can be designed to accumulate in lysosomes – the tiny compartments in a cell that are involved in functions such as waste processing. With appropriate illumination, images of lysosomes can then be reconstructed and viewed in 3D using a technique known as confocal microscopy, enabling scientists to assess lysosome function. Similar approaches are in development for disease states such as obesity and cancer.

Beyond detection, this technique also has potential for therapeutic applications. Massi has performed in vitro studies with healthy and cancerous cells, suggesting that a switch from detection to treatment may be possible by varying the amount of light used to illuminate the cells.

“A bit of light allows you to visualise. A lot of light will allow you to kill the cells,” explains Massi. His approach is on track for product development, with intellectual property protection filed in relation to using phosphorescent compounds to determine the health status of cells.

Improving approaches to cancer treatment is also an ongoing research activity for materials chemist Dr Xia Lou, who designs, constructs and tests nanoparticles for targeted photodynamic therapy, which aims to selectively kill tumours using light-induced reactive oxygen species.

“We construct hybrid nanoparticles with high photodynamic effectiveness and a tumour-targeting agent, and then test them in vitro in our collaborators’ laboratories,” she says. “Our primary interest is in the treatment of skin cancer. The technology has also extended applications in the treatment of other diseases.” Lou has successfully filed patents for cancer diagnosis and treatment that support the potential of this approach.


Spheres and other 3D shapes constructed at the nanoscale offer potential for many applications centred on miniaturised storage and release of molecules and reactivity with target materials. Dr Jian Liu in the Department of Chemical Engineering develops new synthesis strategies for silica or carbon spheres, or ‘yolk-shell’-structured particles. “Our main focus is the design, synthesis and application of colloidal nanoparticles including metal, metal oxides, silica and carbon,” says Liu.

Most of these colloidal particles are nanoporous – that is, they have a lattice-like structure with pores throughout. The applications of such nanoparticles include catalysis, energy storage and conversion, drug delivery and gene therapy.

“The most practical outcome of our research would be the development of new catalysts for the production of synthetic gases, or syngas,” he says. “It may also lead to new electrodes for lithium-ion batteries.” Once developed, nanoscale components for this type of rechargeable battery are expected to bring improved safety and durability, and lower costs.


Atomic Modelling matters in research

Professor Julian Gale leads a world-class research group in computational materials chemistry at the NRI. “We work at the atomic level, looking at fundamental processes by which materials form,” he says. “We can simulate up to a million atoms or more, and then test how the properties and behaviour of the atoms change in response to different experimental conditions.” Such research is made possible through accessing a petascale computer at WA’s Pawsey Centre – built primarily to support Square Kilometre Array pathfinder research.

The capacity to model the nanoscale behaviour of atoms is a powerful tool in nanochemistry research, and can give direction to experimental work. The calcium carbonate mineral vaterite is a case in point. “Our theoretical work on calcium carbonate led to the proposal that the mineral vaterite was actually composed of at least three different forms,” Gale explains. “An international team found experimental evidence which supported this idea.”

NRI Director Professor Andrew Lowe regards this capacity as an asset. “Access to this kind of atomic modelling means that our scientists can work within a hypothetical framework to test whether a new idea is likely to work or not before they commit time and money to it,” he explains.

Scientists at Curtin’s Nanochemistry Research Institute investigate minerals at an atomic level, which can, for example, build an understanding of mineral loss in coral reefs.

Scientists at Curtin’s Nanochemistry Research Institute investigate minerals at an atomic level, which can, for example, build an understanding of mineral loss in coral reefs.


New direction

Formally established in 2001, the Nanochemistry Research Institute began a new era in 2015 through the appointment of Professor Andrew Lowe as Director. Working under his guidance are academic staff and postdoctoral fellows, as well as PhD, Honours and undergraduate science students.

An expert in polymer chemistry, Lowe’s research background adds a new layer to the existing strong multidisciplinary nature of the Institute. “Polymers have the potential to impact on every aspect of fundamental research,” he says. “This will add a new string to the bow of Curtin University science and engineering, and open new and exciting areas of research and collaboration.”

Polymers are a diverse group of materials composed of multiple repeated structural units connected by chemical bonds. “My background is in water-soluble polymers and smart polymers,” explains Lowe. “These materials change the way they behave in response to their external environment – for example, a change in temperature, salt concentrations, pH or the presence of other molecules including biomolecules. Because the characteristics of the polymeric molecules can be altered in a reversible manner, they offer potential to be used in an array of applications, including drug delivery, catalysis and surface modification.”

Lowe has particular expertise in RAFT dispersion polymerisation, a technique facilitating molecular self-assembly to produce capsule-like polymers in solution. “This approach allows us to make micelles, worms and vesicles directly,” he says, describing the different physical forms the molecules can take. “It’s a novel and specialised technique that creates high concentrations of uniformly-shaped polymeric particles at the nanoscale.” Such polymers are candidates for drug delivery and product encapsulation.

Sarah Keenihan

Dr Alan Finkel will be Australia’s new Chief Scientist

Featured photo: Greg Ford/Monash University

New Chief Scientist Dr Alan Finkel will take over the role once the sitting Chief Scientist, Professor Ian Chubb, finishes his five-year stint in the job on 31 December this year.

Finkel was most recently Chancellor of Monash University, a post he has held since 2008. He is also the President of the Australian Academy of Technological Sciences and Engineering (ATSE).

New Chief Scientist Finkel is an outspoken advocate for science awareness and popularisation. He is a patron of the Australian Science Media Centre and has helped launch popular science magazine, Cosmos.

He is also an advocate for nuclear power, arguing that “nuclear electricity should be considered as a zero-emissions contributor to the energy mix” in Australia.

The Australian Academy of Science (AAS) President, Professor Andrew Holmes, welcomes the expected appointment of Finkel to the new Chief Scientist role.

“The Academy is looking forward to the government’s announcement, but Finkel would be an excellent choice for this position. I’m confident he would speak strongly and passionately on behalf of Australian science, particularly in his advice to government,” he says.

“The AAS and ATSE have never been closer; we have worked together well on important issues facing Australia’s research community, including our recent partnership on the Science in Australia Gender Equity initiative.”

Holmes also thanked outgoing Chief Scientist for his strong leadership for science in Australia, including establishing ACOLA as a trusted source of expert, interdisciplinary advice to the Commonwealth Science Council.

“Since his appointment, Chubb has been a tireless advocate of the fundamental importance of science, technology engineering and mathematics (STEM) skills as the key to the country’s future prosperity, and a driving force behind the identification of strategic research priorities for the nation,” says Holmes.

This article was first published on The Conversation on 26 October 2015. Read the original article here.

Expert reactions:

Karen Taylor is Founder and Business Director of Refraction Media

“Finkel is an energetic advocate for STEM across all levels of society, from schools and the general public to corporate leaders. We’re excited and optimistic about the fresh approach science and innovation is enjoying.” 

Professor Emeritus Sir Gustav Nossal is Emeritus Professor in the Department of Pathology at the University of Melbourne

“This is truly the most fantastic news. Finkel is an extraordinary leader. He has proven himself in personal scientific research. He has succeeded in business in competitive fields. It is difficult to think of anyone who would do this important job with greater distinction.”

Dr Ross Smith is President of Science & Technology Australia

“Finkel has a profound understanding of the place of science in a flourishing modern economy, as a scientist, entrepreneur and science publisher of real note. We look forward to working closely with Finkel, as we jointly pursue better links between STEM and industry.”

Prime Minister’s Prizes for Science

Australian scientists and science educators have been honoured at the annual Prime Minister’s Prizes for Science. The awards, introduced in 2000, are considered Australia’s most prestigious and highly regarded awards, and are given in recognition of excellence in scientific research, innovation and science teaching.

The awards acknowledge and pay tribute to the significant contributions that Australian scientists make to the economic and social betterment in Australia and around the world, as well as inspiring students to take an interest in science.

Previous winners include Professor Ryan Lister (Frank Fenner Prize for Life Scientist of the Year in 2014) for his work on gene regulation in agriculture and in the treatment of disease and mental health, and Debra Smith (Prime Minister’s Prize for Excellence in Science Teaching in Secondary Schools in 2010) for her outstanding contribution in redefining how science is taught in Queensland and across the rest of Australia.

This year’s winners were announced by the Prime Minister, Malcolm Turnbull and Christopher Pyne, Minister for Industry, Innovation and Science at a press conference at Parliament House in Canberra yesterday, which was also attended by the Chief Scientist, Professor Ian Chubb.

The 2015 recipients are:

This year’s winner of the Prime Minister’s Prize for Science is Professor Graham Farquhar, Distinguished Professor of the Australian National University’s (ANU) Research School of Biology , a Chief Investigator of the Australian Research Council’s (ARC) Centre of Excellence for Translational Photosynthesis, and leader of the Science and Industry Endowment Fund project on Forests for the Future: making the most of a high [CO2] world.

Professor Farquhar’s models of plant biophysics has led to a greater understanding of cells, whole plants and forests, as well as the creation of new water-efficient wheat varieties. His work has transformed our understanding of the world’s most important biological reaction: photosynthesis.

Farquhar’s most recent research on climate change is seeking to determine which trees will grow faster in a carbon dioxide enriched atmosphere. “Carbon dioxide has a huge effect on plants. My current research involves trying to understand why some species and genotypes respond more to CO2 than others,” he says. And he and colleagues have uncovered a conundrum: global evaporation rates and wind speeds over the land are slowing, which is contrary to the predictions of most climate models. “Wind speed over the land has gone down 15% in the last 30 years, a finding that wasn’t predicted by general circulation models we use to form the basis of what climate should be like in the future,” he says. This startling discovery means that climate change may bring about a wetter world.

“Our world in the future will be effectively wetter, and some ecosystems will respond to this more than others.”

Professor Farquhar will also receive $250,000 in prize money. Looking forward he is committed to important projects, such as one with the ARC looking at the complex responses of plant hydraulics under very hot conditions.

“It’s important to understand if higher temperatures will negatively affect the plants in our natural and managed ecosystems, and if higher temperatures are damaging, we need to understand the nature of the damage and how we can minimise it.”

You can find out more about the 2015 winners including profiles, photos and videos here.

– Carl Williams

Passage of the Medical Research Future Fund Bill

The successful passage of legislation to establish the Medical Research Future Fund (MRFF) Bill 2015 will significantly benefit the health and wellbeing of thousands of Australians. It will also strengthen Australia’s position as a global leader in medical research, says Professor James McCluskey, Deputy Vice Chancellor Research at The University of Melbourne.

“The full $20 billion accumulated in the fund will double Australia’s investment in medical research. This will allow more commercial spinoffs to be captured for the benefit of Australians through innovation, leading to economic activity and new, highly-skilled jobs,” says McCluskey.

With an initial contribution of $1 billion from the uncommitted balance of the Health and Hospitals Fund, and $1 billion provided per year until it reaches $20 billion, the MRFF will support basic and applied medical research – and will be the largest of its kind in the world.

To ensure the MRFF meets the needs of the medical research community, amendments to the Bill include directing funding towards transitional research, which attracts added research funding from the commercial sector. Also included are suggestions by the Australian Green Party, such as ensuring that funding for the Medical Research Council will not be shifted to the MRFF.

By providing an alternative source of funding to the National Health and Medical Research Council (NHMRC), the MRFF will make Australia more competitive with other countries that already have multiple funding agencies.

The UK, for example, has the Medical Research Council – the equivalent of the NHMRC – as well as the $40 billion funded Welcome Trust; a charitable foundation that invests in medical research. The USA also has a number of very generous funding sources, such as the Bill and Melinda Gates Foundation, the National Institutes of Health and the Howard Hughes Medical Research Foundation.

Researchers from the health, university, industry and independent medical research institute sectors will be able to access MRFF. It may also include interdisciplinary sectors such as medical physics, big data analytics and others contributing to national health and medical outcomes.

“Importantly, MRFF will also include initiatives that are currently not well supported by public research funding schemes,” says McCluskey. “For example, joint research with government or pharma [the pharmaceutical industry] in the development of new drugs and medical devices.”

The exact fields to be targeted will be determined by the Minister for Health, Sussan Ley. Advice will come from an independent board of experts including the CEO of NHMRC and eight experts in medical research and innovation, health policy, commercialisation, experience and knowledge in philanthropy, consumer issues, and translation of research into applications in frontline medical practice. The Minister will announce the members of the board shortly.

The MRFF will be established following Royal Assent of the Bill.

– Carl Williams

Tracing change: past Australian environments

Curtin University researchers are creating snapshots of past Australian environments using the minute traces left behind by plants, animals and microorganisms. Dr Svenja Tulipani and Professor Kliti Grice from the WA-Organic and Isotope Geochemistry Centre looked for clues in sediments at Coorong National Park, South Australia, to find out how this system of coastal lagoons has changed since European settlement.

The Coorong Wetland is an ecologically significant area, but human water management practices and severe drought have led to increased salinity and less biodiversity, Tulipani explains. By examining microscopic molecular fossils, known as biomarkers, and their stable carbon and hydrogen isotopes, the researchers have identified the types of organisms that previously lived in the area, uncovering evidence for changes in water level and salinity due to changes in carbon and hydrogeological cycles.

“We found significant changes that started in the 1950s, at the same time that water management was intensified,” Tulipani says. “It affects the whole food web, including the birdlife and ecology,” Grice adds.


“We found significant changes that started in the 1950s, which was the same time that the water management was intensified.”


The project used Curtin’s world-class instruments for gas chromatography-mass spectrometry, as well as a new instrument that is capable of even better analysis.

“It allows for a new technique that reduces sample preparation time as the organic compounds can be analysed in more complex mixtures, such as whole oils or extracts of sediments and modern organisms,” Tulipani explains. “We can also identify more compounds this way.”

Tulipani has been able to use samples taken from the remote Kimberley region to examine an extinction event around 380 million years ago. Grice says the techniques are particularly relevant to the evolution of primitive vascular plants during this time period.

“In some locations of the Pilbara region, you can look at very early life from more than 2.5 billion years ago. You can go back practically to the beginning of life.”

Michelle Wheeler

Supercontinent Revolution

Professor of geology at Curtin University Dr Zheng-Xiang Li considers himself a very lucky man. Born in a village in Shandong Province, East China, he fondly remembers the rock formations in the surrounding hills. But he was at school during the end of the Cultural Revolution – a time when academic pursuit was frowned upon and it was very hard to find good books to read. “Fortunately, I had some very good teachers who encouraged my curiosity,” recalls Li.

He went on to secure a place at the prestigious Peking University to study geology and geophysics. And in 1984, when China’s then leader Deng Xiaoping sent a select number of students overseas, Li took the opportunity to study for a PhD in Australia. With an interest in plate tectonics and expertise in palaeomagnetism, he’s since become an authority on supercontinents.

It is widely accepted that the tectonic plates – which carry the continents – are moving, and that a supercontinent, Pangaea, existed 320–170 million years ago. Li’s research
is aimed at understanding how ‘Earth’s engine’ drives the movement of the plates.

His work has been highly influential, showing that another supercontinent, Rodinia, formed about 600 million years before Pangaea. And evidence is mounting that there was yet another ancient supercontinent before that, known as Nuna, which assembled about 1600 million years ago.

Li suspects there is a cycle wherein supercontinents break up and their components then disperse around the globe, before once again coming together as a new supercontinent.

“The supercontinent cycle is probably around 600 million years. We are in the middle of a cycle: halfway between Pangaea and a fresh supercontinent,” he says.

“We are at the start of another geological revolution. Plate tectonics revolutionised geology in the 1960s. I think we are now in the process of another revolution,” Li adds, undoubtedly excited by his work.

“The meaning of life can be described by three words beginning with ‘F’ – family, friends and fun,” he says. “And for me, work falls in the fun part.”

Clare Pain

A Remarkable Career

Compelled to move to Perth in 1972 because “there were no meaningful jobs in geoscience in the UK at the time”, John Curtin Distinguished Professor Simon Wilde carved out an illustrious career in the decades that followed his PhD at the University of Exeter.

“My work is largely focused on Precambrian geology, divided between Northeast Asia, the Middle East, India and Western Australia,” explains Wilde, from the Department of Applied Geology at Curtin University. In 2001, Wilde received extensive media attention for his discovery of the oldest object ever found on Earth – a tiny 4.4 billion-year-old zircon crystal dug up in the Jack Hills region of Western Australia.

His zircon expertise and vast knowledge of early-Earth crustal growth and rock dating have taken him to many of the key areas in the world where Archean (more than 2.5 billion-year-old) rocks are exposed. Of these international investigations, perhaps the most impressive have been his contributions to understanding the geology of North China. Part of the first delegation of foreign researchers to visit the Aldan Shield in Siberia in 1988, along with several top Chinese geoscientists, Wilde has since fostered friendships and collaborations with colleagues in five top Chinese universities, as well as the Chinese Academy of Sciences and the Chinese Academy of Geological Sciences.

“I have been to China more than 100 times and published more than 100 papers on Chinese geology, including major reviews of the North China Craton and the Central Asian Orogenic Belt, where I am a recognised expert.”

The Institute for Geoscience Research (TIGeR) at Curtin University is designated as a high-impact Tier 1 centre – the most distinguished research grouping within the university – providing a focus for substantial activity across a specific field of study. Wilde stepped down as Director in February 2015, having championed TIGeR research, provided advice and allocated funding for the eight years since the Institute was formed. He is confident that his research and the foundations he has built for the centre will continue to support innovative geoscience and exciting collaboration initiatives – in which he is certain to continue playing a major part.

Ben Skuse

Fuelling the future

The complex engineering that drives renewable energy innovation, global satellite navigation, and the emerging science of industrial ecology is among Curtin University’s acknowledged strengths. Advanced engineering is crucial to meeting the challenges of climate change and sustainability. Curtin is addressing these issues in several key research centres.

Bioenergy, fuel cells and large energy storage systems are a focus for the university’s Fuels and Energy Technology Institute (FETI), launched in February 2012. The institute brings together a network of more than 50 researchers across Australia, China, Japan, Korea, Denmark and the USA, and has an array of advanced engineering facilities and analytic instruments. It also hosts the Australia-China Joint Research Centre for Energy, established in 2013 to address energy security and emissions reduction targets for both countries. 

Curtin’s Sustainable Engineering Group (SEG) has been a global pioneer in industrial ecology, an emerging science which tracks the flow of resources and energy in industrial areas, measures their impact on the environment and works out ways to create a “circular economy” to reduce carbon emissions and toxic waste.

And in renewable energy research, Curtin is developing new materials for high temperature fuel cell membranes, and is working with an award-winning bioenergy technology that will use agricultural crop waste to produce biofuels and generate electricity.


Solar’s big shot

Curtin’s hydrogen storage scientists are involved in one of the world’s biggest research programs to drive down the cost of solar power and make it competitive with other forms of electricity generation such as coal and gas. They are contributing to the United States SunShot Initiative – a US$2 billion R&D effort jointly funded by the US Department of Energy and private industry partners to fast track technologies that will cut the cost of solar power, including manufacturing for solar infrastructure and components.

SunShot was launched in 2011 as a key component of President Obama’s Climate Action Plan, which aims to double the amount of renewable energy available through the grid and reduce the cost of large-scale solar electricity by 75%.

Professor Craig Buckley, Dean of Research and Professor of Physics at Curtin’s Faculty of Science and Engineering, is the lead investigator on an Australian Research Council Linkage Project on energy storage for Concentrating Solar Power (CSP), and a chief investigator with the SunShot CSP program. His team at Curtin’s Hydrogen Storage Research Group is using metal hydrides to develop a low cost hydrogen storage technology for CSP thermal energy plants such as solar power towers.

CSP systems store energy in a material called molten salts – a mixture of sodium nitrate and potassium nitrate, which are common ingredients in plant fertilisers. These salts are heated to 565°C, pumped into an insulated storage tank and used to produce steam to power a turbine to generate electricity. But it’s an expensive process. The 195 m tall Crescent Dunes solar power tower in Nevada – one of the world’s largest and most advanced solar thermal plants – uses 32,000 tonnes of molten salt to extend operating hours by storing thermal energy for 10 hours after sunset.

Metal hydrides – compounds formed by bonding hydrogen with a material such as calcium, magnesium or sodium – could replace molten salts and greatly reduce the costs of building and operating solar thermal power plants. Certain hydrides operate at higher temperatures and require smaller storage tanks than molten salts. They can also be reused for up to 25 years.

At the Nevada plant, molten salt storage costs an estimated $150 million, – around 10–15% of operation costs, says Buckley. “With metal hydrides replacing molten salts, we think we can reduce that to around $50–$60 million, resulting in significantly lower operation costs for solar thermal plants,” he says. “We already have a patent on one process, so we’re in the final stages of testing the properties of the process for future scale-up. We are confident that metal hydrides will replace molten salts as the next generation thermal storage system for CSP.”


From biomass to fuel

John Curtin Distinguished Professor Chun-Zhu Li is lead researcher on a FETI project that was awarded a grant of $5.2 million by the Australian Renewable Energy Agency in 2015 to build a pilot plant to test and commercialise a new biofuel technology. The plant will produce energy from agricultural waste such as wheat straw and mallee eucalypts from wheatbelt farm forestry plantations in Western Australia.

“These bioenergy technologies will have great social, economic and environmental benefits,” says Li. “It will contribute to the electricity supply mix and also realise the commercial value of mallee plantations for wheatbelt farmers. It will make those plantations an economically viable way of combating the huge environmental problem of dryland salinity in WA.”

Li estimates that WA’s farms produce several million tonnes of wheat straw per year, which is discarded as agricultural waste. Biomass gasification is a thermochemical process converting biomass feedstock into synthesis gas (syngas) to generate electricity using gas engines or other devices.

One of the innovations of the biomass gasification technology developed at FETI is the destruction of tar by char or char-supported catalysts produced from the biomass itself. Other biomass gasification systems need water-scrubbing to remove tar, which also generates a liquid waste stream requiring expensive treatment, but the technology developed by Li’s team removes the tar without the generation of any wastes requiring disposal. This reduces construction and operation costs and makes it an ideal system for small-scale power generation plants in rural and remote areas.

Li’s team is also developing a novel technology to convert the same type of biomass into liquid fuels and biochar. The combined benefits of these bioenergy/biofuel technologies could double the current economic GDP of WA’s agricultural regions, Li adds. future scale-up. We are confident that metal hydrides will replace molten salts as the next generation thermal storage system for CSP.”


Keeping renewables on grid

Professor Syed Islam is a John Curtin Distinguished Professor with Curtin’s School of Electrical Engineering and Computing. It’s the highest honour awarded by the university to its academic staff and recognises outstanding contributions to research and the wider community. Islam has published widely on grid integration of renewable energy sources and grid connection challenges. In 2011, he was awarded the John Madsen Medal by Engineers Australia for his research to improve the prospect of wind energy generation developing grid code enabled power conditioning techniques.

Islam explains that all power generators connected to an electricity network must comply with strict grid codes for the network to operate safely and efficiently. “The Australian Grid Code specifically states that wind turbines must be capable of uninterrupted operation, and if electrical faults are not immediately overridden, the turbines will be disconnected from the grid,” he says.

“Wind energy is a very cost effective renewable technology. But disturbances and interruptions to power generation mean that often wind farms fall below grid code requirements, even when the best wind energy conversion technology is being used.”

Islam has led research to develop a system that allows a faster response by wind farm voltage control technologies to electrical faults and voltage surges. It has helped wind turbine manufacturers meet grid regulations, and will also help Australia meet its target to source 20% of electricity from renewable energy by 2020.

Islam says micro-grid technology will also provide next-generation manufacturing opportunities for businesses in Australia. “There will be new jobs in battery technology, in building and operating micro-grids and in engineering generally,” he says.

“By replacing the need for platinum catalysts, we can make fuel cells much cheaper and more efficient, and reduce dependence on environmentally damaging fossil fuels.”


Cutting fuel cell costs

Professor San Ping Jiang from FETI and his co-researcher Professor Roland De Marco at University of the Sunshine Coast in Queensland recently received an Australian Research Council grant of $375,000 to develop a new proton exchange membrane that can operate in high-temperature fuel cells. It’s a materials engineering breakthrough that will cut the production costs of fuel cells, and allow more sustainable and less polluting fuels such as ethanol to be used in fuel cells.

Jiang, who is based at Curtin’s School of Chemical and Petroleum Engineering, has developed a silica membrane that can potentially operate at temperatures of up to 500°C. Fuel cells directly convert chemical energy of fuels suchas hydrogen, methanol and ethanol into electricity and provide a lightweight alternative to batteries, but they are currently limited in their application because conventional polymer-based proton exchange membranes perform most efficiently at temperatures below 80°C. Jiang has developed a membrane that can operate at 500°C using heteropoly acid functionalised mesoporous silica – a composite that combines high proton conductivity and high structural stability to conduct protons in fuel cells. His innovation also minimises the use of precious metal catalysts such as platinum in fuel cells, reducing the cost.

“The cost of platinum is a major barrier to the wider application of fuel cell technologies,” Jiang says. “We think we can reduce the cost significantly, possibly by up to 90%, by replacing the need for platinum catalysts. It will make fuel cells much cheaper and more efficient, and reduce dependence on environmentally damaging fossil fuels.”

He says the high temperature proton exchange membrane fuel cells can be used in devices such as smartphones and computers, and in cars, mining equipment and communications in remote areas.


Doing more with less

The SEG at Curtin University has been involved in energy efficiency and industrial analysis for just over 15 years. It’s been a global leader in an emerging area of sustainability assessment known as industrial ecology, which looks at industrial areas as ‘ecosystems’ that can develop productive exchanges of resources.

Associate Professor Michele Rosano is SEG’s Director and a resource economist who has written extensively on sustainability metrics, charting the life cycles of industrial components, carbon emission reduction and industrial waste management. They’re part of a process known as industrial symbiosis – the development of a system for neighbouring industries to share resources, energies and by-products. “It’s all about designing better industrial systems, and doing more with less,” Rosano says.

Curtin and SEG have been involved in research supported by the Australian’s Government’s Cooperative Research Centres Program to develop sustainable technologies and systems for the mineral processing industry at the Kwinana Industrial Area, an 8 km coastal industrial strip about 40 km south of Perth. The biggest concentration of heavy industries in Western Australia, Kwinana includes oil, alumina and nickel refineries, cement manufacturing, chemical and fertiliser plants, water treatment utilities and a power station that uses coal, oil and natural gas.

Rosano says two decades of research undertaken by Curtin at Kwinana is now recognised as one of the world’s largest and most successful industrial ecology projects. It has created 49 industrial symbiosis projects, ranging from shared use of energy and water to recovery and reuse of previously discarded by-products.

“These are huge and complex projects which have produced substantial environmental and economic benefits,” she says. “Kwinana is now seen as a global benchmark for the way in which industries can work together to reduce their footprint.”

An example of industrial synergies is waste hydrochloric acid from minerals processing being reprocessed by a neighbouring chemical plant for reuse in rutile quartz processing. The industrial ecology researchers looked at ways to reuse a stockpile of more than 1.3 million tonnes of gypsum, which is a waste product from the manufacture of phosphate fertiliser and livestock feeds. The gypsum waste is used by Alcoa’s alumina refinery at Kwinana to improve soil stability and plant growth in its residue areas.

The BP oil refinery at Kwinana also provides hydrogen to fuel Perth’s hydrogen fuel-cell buses. The hydrogen is produced by BP as a by-product from its oil refinery and is piped to an industrial gas facility that separates, cleans and pressurises it. The hydrogen is then trucked to the bus depot’s refuelling station in Perth.

Rosano says 21st century industries “are serious about sustainability” because of looming future shortages of many raw materials, and also because research has demonstrated there are social, economic and environmental benefits to reducing greenhouse emissions.

“There is a critical need for industrial ecology, and that’s why we choose to focus on it,” she says. “It’s critical research that will be needed to save and protect many areas of the global economy in future decades.”


in text

Planning for the future

Research by Professor Peter Teunissen and Dr Dennis Odijk at Curtin’s Department of Spatial Sciences was the first study in Australia to integrate next generation satellite navigation systems with the commonly used and well-established Global Positioning System (GPS) launched by the United States in the 1990s.

Odijk says a number of new systems are being developed in China, Russia, Europe, Japan, and India, and it’s essential they can interact successfully. These new Global Navigation Satellite Systems (GNSS) will improve the accuracy and availability of location data, which will in turn improve land surveying for locating mining operations and renewable energy plants.

“The new systems have an extended operational range, higher power and better modulation. They are more robust and better able to deal with challenging situations like providing real-time data to respond to bushfires and other emergencies,” says Odijk.

“When these GNSS systems begin operating over the next couple of years, they will use a more diverse system of satellites than the traditional GPS system. The challenge will be to ensure all these systems can link together.”

Integrating these systems will increase the availability of data, “particularly when the signals from one system might be blocked in places like open-pit mines or urban canyons – narrow city streets with high buildings on both sides.”

Teunissen and Odijk’s research on integrating the GNSS involves dealing with the complex challenges of comparing estimated positions from various satellites, as well as inter-system biases, and developing algorithms. The project is funded by the Cooperative Research Centre for Spatial Information, and includes China’s BeiDou Navigation Satellite System, which is now operating across the Asia-Pacific region.

Rosslyn Beeby

Immense Vision

In any given week, Tingay might be discussing a galaxy census, monitoring solar flares for the US Air Force or investigating the beginning of the universe.

Tingay is the Director of the Curtin Institute of Radio Astronomy at Curtin University, Deputy Director of the International Centre for Radio Astronomy Research and Director of the Murchison Widefield Array (MWA). Still less than two years old, the MWA has already entered uncharted territory, collecting data that will uncover the birth of stars and galaxies in the very early universe and produce an unprecedented galaxy catalogue of half a million objects in the sky. The MWA could also one day provide early warning of destructive solar flares that can knock out the satellite communications we rely on.

“To date, we’ve collected upwards of four petabytes of data and all the science results are starting to roll out in earnest now,” he says.

“It’s an amazing feeling for the team to have pulled together, delivered the instrument, and to do things that no one ever expected we could do when we did the planning.”

The project sees Curtin University lead a prestigious group of partners, including Harvard University and MIT, in four countries. And while the MWA is a powerful telescope in its own right, it paves the way for what is arguably the biggest science project on the planet – the Square Kilometre Array (SKA).

The promise of this multi-billion dollar telescope, which will be built across Western Australia and South Africa, drove Tingay to move to Perth seven years ago. “I like to be close to the action, building and operating telescopes, and using them to do interesting experiments that no one else has done before – in close physical proximity.”

His team of 55 researchers at Curtin University are working on the astrophysics, engineering and ICT challenges of the SKA.

“Curtin is an amazing place to work,” he says. “It’s focused on a few very high-impact developments and making sure that they’re properly funded and resourced.

“Periodically, I sit down and think: ‘Where else in the world would I rather be?’ and every time I conclude that for radio astronomy Curtin University in Perth is the best place to be.”

Michelle Wheeler

Across the skies

Today NASA announced the paradigm shifting discovery of flowing water on Mars. This extraterrestrial salty water bodes well for a water cycle on Mars, and potential hosting of Martian life. What mysteries lie on Mars, we may find out soon – but for the infinite mysteries that lie beyond – we have the Earth’s largest radio telescope, the Square Kilometre Array (SKA), manned by the Curtin Institute of Radio Astronomy.

The engineering challenges behind building the world’s biggest radio telescope are vast, but bring rewards beyond a better understanding of the universe.

Since its inception, the Curtin Institute of Radio Astronomy has established itself as an essential hub for astronomy research in Australia. Known as CIRA, the organisation brings together engineering and science expertise in one of Australia’s core research strengths: radio astronomy.

Through CIRA’s research node, Curtin is an equal partner in the International Centre for Radio Astronomy Research (ICRAR) with the University of Western Australia. Curtin also contributes staff to the Australian Research Council Centre of Excellence for All-sky Astrophysics. One of the core strengths of CIRA is the construction of next generation telescopes. These include work on one of the world’s biggest scientific endeavours and the SKA.

CIRA’s Co-Directors, Professors Steven Tingay and Peter Hall, were on the team who pitched Australia’s successful bid to host part of the SKA – a radio telescope that will stretch across Australia and Africa. The SKA’s two hosting nations were announced in May 2012 and the project forms the main focus of research at CIRA. And for good reason: the SKA-low – a low-frequency aperture array consisting of a quarter of a million individual antennas in its first phase – will be built in Western Australia at the Murchison Radio-astronomy Observatory (MRO), about 800 km north of Perth.

The near-flat terrain and lack of radio noise from electronics and broadcast media in this remote region allow for great sky access and ease of construction. At Phase 1, SKA-low will cover the project’s lowest-frequency band, from 50 MHz up to 350 MHz – with antennas covering approximately 2 km at the core, stretching out to 50 km along three spiral arms.

“Out of 10 organisations in a similar number of countries, CIRA is the largest single contributor to the low frequency array consortium,” says Hall, the Director responsible for engineering at CIRA.

Far from a traditional white dish radio telescope, which mechanically focuses beams, the SKA-low will be a huge array of electronic antennas with no moving parts. Its programmable signal processors will be able to focus on multiple fields of view and perform several different processes simultaneously. “You can point at as many directions as you want with full sensitivity – that’s the beauty of the electronic approach,” says Senior Research Fellow Dr Randall Wayth, an astronomer and signal processing specialist at CIRA.


One of the major scientific goals of SKA-low is to help illuminate the events of the early universe, particularly the stage of its formation known as the ‘epoch of reionisation’. Around 13 billion years ago, all matter in the early universe was ionised by radiation emitted from the earliest stars. The record of this reionisation carries with it telltale radio signatures that reveal how those early stars formed and turned into galaxies. Observing this directly for the first time will allow astronomers to unlock fundamental new physics.

“To see what’s going on there at the limits of where we can see in time and space, you have to have telescopes that are sensitive to wide-field, diffuse structures, and that are exquisitely calibrated. You have to be able to reject the foreground universe and local radio frequency interference,” says Hall. This sensitivity to diffuse structures will make SKA-low and its precursor, the Murchison Widefield Array (MWA), essential instruments in studying the epoch of reionisation.

The SKA-low will also be important in studying time domain astronomy, which consists of phenomena occurring over a vast range of timescales. One example is the field of pulsar study. Pulsars are incredibly dense rotating stars that, much like a lantern in a lighthouse, emit a beam of radiation at extremely regular intervals. This regularity makes pulsars useful tools for a variety of scientific applications, including accurate timekeeping.

By the time the radio signal from a distant pulsar travels across space and reaches Earth, it is dispersed. But with the right telescope, you can calibrate against this dispersion, and trace back the original regular signal.

“One of the great things you can do with a low frequency telescope such as the SKA-low is get a very good look at the pulsar signal,” says Hall. “As well as stand-alone SKA-low pulsar studies, the measurement of hour-to-hour dispersion changes can be fed to telescopes at higher frequencies, vastly improving their ability to do precision pulsar timing.”

“It’s a big advantage having the critical mass of people in this building to make things happen.”


It’s not just astronomy research that is benefiting from the construction of the SKA-low and its precursors (two precursor telescopes are in place at the MRO: the MWA and the Australian Square Kilometre Array Precursor telescope, ASKAP). In order to make the most out of the aperture array telescopes, some fundamental engineering challenges need to be solved. Challenges such as how to characterise the antennas to ensure that they meet design specifications, or how to design a photovoltaic system to power the SKA without producing too many unwanted emissions. Solving these problems requires both a deep understanding of the fundamental physics involved as well as knowledge of how to engineer solutions around those physics.

The projected construction timeframe for SKA-low is 2018–2023, but there is already infrastructure in place to begin testing its design and operation. Consisting of 2048 fixed dual-polarisation dipole antennas arranged in 128 ‘tiles’, the MWA boasts a wide field of view of several hundred square degrees at a resolution of arcminutes. It has provided insight into the challenges that will arise during the full deployment of SKA-low, not the least of which is managing the volume of data resulting from the measurements.

“The MWA already has a formidable data rate. We transmit 400 megabits per second down to Perth, and processing that is a substantial challenge,” says Wayth. The challenge is a necessary one, as the stream of data that comes from a fully operational SKA-low will be orders of magnitude larger.

“While doing groundbreaking science, the MWA is just manageable for us at the moment in terms of data rate. It teaches us what we have to do to handle the data.”

Continued CIRA developments at the MRO have included the construction of an independently commissioned prototype system, the Aperture Array Verification System 0.5 (AAVS0.5). The results from testing it in conjunction with the MWA surprised the engineers and scientists. “Engineers know that building even a tiny prototype teaches you a lot,” says Hall.

In their case, some carefully-matched cables turned out to be mismatched in their electrical delay lengths. Using the AAVS0.5, they have already been able to improve the MWA calibration. “We were able to feedback that engineering science into the MWA astronomy calibration model, and we now have a better model to calibrate and clean the images from the MWA,” says Hall.

Following the success of AAVS0.5, over the next two years CIRA will be leading the construction of the much larger AAVS1, designed to mimic a full SKA-low station.


Developing the SKA-low and its precursors is an huge effort, demanding the best in astrophysics, engineering and data processing. CIRA is uniquely positioned to accomplish this feat, with a large research staff, fully equipped engineering laboratory and access to the nearby Pawsey Supercomputing Centre for data processing. “CIRA has astronomers and engineers, as well as people who do both. We have all the skills to do these things in-house,” says Hall.

“It’s a big advantage having the critical mass of people in this building to make things happen,” says Wayth. “It’s a rare case where the sum of the parts really is greater than the whole.”

Opportunities for students and early-career researchers to engage in the project are already underway. Dozens of postgraduate research projects commencing in 2015 will involve the MWA, AAVS and ASKAP directly. Topics range from detecting the radio signature of fireballs to investigating the molecular chemistry of star formation. As well as producing novel scientific outcomes, these projects will feed valuable test data into the major scientific investigations slated for the SKA as it becomes operational.

 

The Pawsey Supercomputing Centre will manage the enormous volume of data collected by SKA-low.

The Pawsey Supercomputing Centre will manage the enormous volume of data collected by SKA-low.

A Supercomputer in the backyard

The scale of SKA, and the resultant flood of data, requires the rapid development of methods to process data. The Pawsey Supercomputing Centre – a purpose-built powerhouse named after pioneering Australian radio astronomer Dr Joe Pawsey and run by the Interactive Virtual Environments Centre (iVEC) – includes a supercomputer called Galaxy, dedicated to radio astronomy research. A key data challenge is finding ways in which the signal processing method can be split up and processed simultaneously, or ‘parallelised’, so that the full force of the supercomputing power can be used. The proximity of the signal processing experts at CIRA to iVEC means that researchers can continually prototype new ways of parallelising the data, with the goal being to achieve real-time analysis of data streaming in from the SKA.

Phillip English

Celebrating Australian succcess

Success lay with the University of Melbourne, which won Best Commercial Deal for the largest biotech start-up in 2014; the Melbourne office of the Defence Science and Technology Group, which won Best Creative Engagement Strategy for its ‘reducing red tape’ framework; and Swinburne University for the People’s Choice Award.

“These awards recognise research organisations’ success in creatively transferring knowledge and research outcomes into the broader community,” said KCA Executive Officer, Melissa Geue.

“They also help raise the profile of research organisations’ contribution to the development of new products and services which benefit wider society and sometimes even enable companies to grow new industries in Australia.”

Details of the winners are as follows:

The Best Commercial deal is for any form of commercialisation in its approach, provides value-add to the research institution and has significant long term social and economic impact:

University of Melbourne – Largest bio tech start-up for 2014

This was for Australia’s largest biotechnology deal in 2014 which was Shire Plc’s purchase of Fibrotech Therapeutics P/L – a University of Melbourne start-up – for US$75 million upfront and up to US$472m in following payments. Fibrotech develops novel drugs to treat scarring prevalent in chronic conditions like diabetic kidney disease and chronic kidney disease. This is based on research by Professor Darren Kelly (Department of Medicine St. Vincent’s Hospital).

Shire are progressing Fibrotech’s lead technology through to clinical stages for Focal segmental glomerulosclerosis, which is known to affect children and teenagers with kidney disease. The original Fibrotech team continues to develop the unlicensed IP for eye indications in a new start-up OccuRx P/L.

Best Creative Engagement Strategy showcases some of the creative strategies research organisations are using to engage with industry partner/s to share and create new knowledge:

Defence Science and Technology Group –Defence Science Partnerships (DSP) reducing red tape with a standardised framework

The DSP has reduced transaction times from months to weeks with over 300 agreements signed totalling over $16m in 2014-15. The DSP is a partnering framework between the Defence Science Technology Group of the Department of Defence and more than 65% of Australian universities. The framework includes standard agreement templates for collaborative research, sharing of infrastructure, scholarships and staff exchanges, simplified Intellectual Property regimes and a common framework for costing research. The DSP was developed with the university sector in a novel collaborative consultative approach.

The People’s Choice Awards is open to the wider public to vote on which commercial deal or creative engagement strategy project deserves to win. The winner this year, who also nabbed last years’ award is:

Swinburne University of Technology – Optical data storage breakthrough leads the way to next generation DVD technology – see DVDs are the new cool tech

Using nanotechnology, Swinburne Laureate Fellowship project researchers Professor Min Gu, Dr Xiangping Li and Dr Yaoyu Cao achieved a breakthrough in data storage technology and increased the capacity of a DVD from a measly 4.7 GB to 1,000 TB. This discovery established the cornerstone of a patent pending technique providing solutions to the big data era. In 2014, start-up company, Optical Archive Inc. licensed this technology. In May 2015, Sony Corporation of America purchased the start-up, with knowledge of them not having any public customers or a final product in the market. This achievement was due to the people, the current state of development and the intellectual property within the company.

This article was shared by Knowledge Commercialisation Australia on 11 September 2015. 

Forest decline is slowing

Forests worldwide are declining but the rate of decline is slowing due to improved forest management, according to the most comprehensive long-term forest survey ever completed.

The review of 25 years of forest management in 234 countries was conducted by Dr Sean Sloan and Dr Jeff Sayer of James Cook University, in conjunction with dozens of international researchers and the Food and Agricultural Organization of the United Nations.

The study found that the global deforestation rate since 2010 – 3.3 million hectares per year – is less than half that during the 1990s (7.2 million hectares per year).

This global slowdown is due to better management of tropical forests. Since 2010 the tropics lost 5.5 million hectares of forest per year, compared to 9.5 million hectares per year during the 1990s.

Sub-tropical, temperate, and boreal climatic regions had relatively stable forest areas.

Logging operation in Sumatra.

Logging operation in Sumatra.

Satellite data showed tropical forests degraded (damaged but not cleared) since 2000 are six times as extensive as all tropical deforestation since 1990, far more than in other climatic regions.

“While some of this tropical degradation reflects the temporary impacts of logging, the real fear is that much is the leading edge of gradual forest conversion,” Sloan says.

High rates of tropical deforestation and degradation mean that tropical forests were a net emitter of carbon to the atmosphere, unlike forests of other climatic regions.

“But tropical forests are emitting only slightly more carbon than they are absorbing from the atmosphere due to regrowth, so with slightly better management they could become a net carbon sink and contribute to fighting climate change,” Sloan says.

Despite growing demand for forest products, rates of plantation afforestation have fallen since the 2000s and are less than required to stop natural forest exploitation. Demand for industrial wood and wood fuel increased 35% in the tropics since 1990.

“The planting of forests for harvest is not increasing as rapidly as demand, so natural forests have to take the burden,” Sloan says.

Northern, richer countries had steady or increasing forest areas since 1990. Their forests are increasingly characterised by plantations meant for harvest.

While natural forests expanded in some high-income countries, collectively they declined by 13.5 million hectares since 1990, compared to a gain of 40 million hectares for planted forests.

Sloan says that investment in forest management in poorer tropical countries where management and deforestation were worst may herald significant environmental gains.

“But attention must extend beyond the forest sector to agricultural and economic growth, which is rapid in many low-income and tropical countries and which effect forests greatly,” Sayer says.


Background to Study

The Food and Agricultural Organization (FAO) released the Global Forest Resources Assessment 2015 (FRA 2015) on September 7 2015. The FAO began publishing FRA reports in 1948 to assess the global state of forest resources, given concerns over shortages of forest products. The FAO has published FRA reports at regular intervals since on the basis of individual reports from countries, numbering 234 for the FRA 2015. FRA reports now survey a wide array of forest ecological functions, designations, and conditions in addition to forest areas for each country.

For the first time, the FRA 2015 report was realised by dozens of international experts who undertook independent analyses of FRA data, resulting in 13 scholarly articles published in a special issue of the journal Forest Ecology and Management (2015 volume 352).

The data and trends highlighted in these articles are a significant advance for the global scientific and conservation communities. This article constitutes one of 13 published in Forest Ecology and Management and integrates their major findings.


This article was first published by James Cook University on 8 September 2015. Read the original article here.

Southern stars: the decade ahead for Australian astronomy

Extremely large optical telescopes, including the Giant Magellan Telescope (GMT), which is due to be built in Chile in 2021, will allow studies of stars and galaxies at the dawn of the universe, and will peer at planets similar to ours around distant stars.

The Square Kilometer Array (SKA), which will be constructed in Australia and South Africa over the next several years, will observe the transformation in the young universe that followed the formation of the first generation of stars and test Einstein’s theory of relativity.

Large-scale surveys of stars and galaxies will help us discover how elements are produced and recycled through galaxies to enrich the universe. The revolutionary sensitivity of the GMT will also be used to understand the properties of ancient stars born at the dawn of the universe.

In the coming decade, astronomers will also learn how galaxies evolve across cosmic time through new coordinated Australian-led surveys using the Australian SKA Pathfinder, the Australian Astronomical Observatory and next-generation optical telescopes.

On the largest scales, dark matter and dark energy comprise more than 95% of the universe, and yet their nature is still unknown. Australian astronomers will use next-generation optical telescopes to measure the growth of the universe and probe the unknown nature of dark matter and dark energy.

The long-anticipated detection of gravitational waves will also open a window into the most extreme environments in the universe. The hope is that gravitational waves generated by the collision of black holes will help us better understand the behavior of matter and gravity at extreme densities.

Closer to home, the processes by which interstellar gas is turned into stars and solar systems are core to understanding our very existence. By combining theoretical simulations with observations from the Australia Telescope Compact Array and the GMT, Australian astronomers will discover how stars and planets form.

And this far-reaching knowledge will inform new theoretical models to achieve an unprecedented understanding of the universe around us.


Australia’s role

These are some of the exciting projects highlighted in the latest decadal plan for Australian astronomy, which was launched at Parliament House on Wednesday August 12.

Over the past decade, Australian astronomers have achieved a range of major breakthroughs in optical and radio astronomy and in theoretical astrophysics.

Star trails above one of Australia’s great telescopes at Siding Spring Observatory. Australian Astronomical Observatory/David Malin

Star trails above one of Australia’s great telescopes at Siding Spring Observatory. Australian Astronomical Observatory/David Malin

Australian astronomers have precisely measured the properties of stars, galaxies and of the universe, significantly advancing our understanding of the cosmos. The mass, geometry, and expansion of the universe have been measured to exquisite accuracy using giant surveys of galaxies and exploding stars. Planetary astronomy has undergone a revolution, with the number of planets discovered around other stars now counted in the thousands.

In forming a strategy for the future, Australia in the Era of Global Astronomy assesses these and other scientific successes, as well as the evolution of Australian astronomy including it’s broader societal roles.

Astronomy is traditionally a vehicle for attracting students into science, technology, engineering and mathematics (STEM). The report also highlights expanding the use of astronomy to help improve the standard of science education in schools through teacher-training programs.

Training aimed at improving the “transferrable” skills of graduate and postgraduate astronomy students will also help Australia improve its capacity for innovation.


Look far

The Australian astronomy community has greatly increased its capacity in training of higher-degree students and early-career researchers. However, Australian astronomy must address the low level of female participation among its workforce, which has remained at 20% over the past decade.

The past decade has seen a large rise in Australian scientific impact from international facilities. This move represents a watershed in Australian astronomical history and must be strategically managed to maintain Australia’s pre-eminent role as an astronomical nation.

The engagement of industry will become increasingly important in the coming decade as the focus of the scientific community moves from Australian-based facilities, which have often been designed and built domestically, towards new global mega-projects such as the SKA.

While a decade is an appropriate timescale on which to revisit strategic planning across the community, the vision outlined in the plan looked beyond the past decade, recommending far-reaching investments in multi-decade global projects such as the GMT and the SKA.

These recent long-term investments will come to fruition in the coming decade, positioning Australia to continue as a global astronomy leader in the future.

This article was first published by The Conversation on 24 August 2015. Read the original article here.

From science fiction to reality: the dawn of the biofabricator

 

“We can rebuild him. We have the technology.”
– The Six Million Dollar Man, 1973

Science is catching up to science fiction. Last year a paralysed man walked again after cell treatment bridged a gap in his spinal cord. Dozens of people have had bionic eyes implanted, and it may also be possible to augment them to see into the infra-red or ultra-violet. Amputees can control bionic limb implant with thoughts alone.

Meanwhile, we are well on the road to printing body parts.

We are witnessing a reshaping of the clinical landscape wrought by the tools of technology. The transition is giving rise to a new breed of engineer, one trained to bridge the gap between engineering on one side and biology on the other.

Enter the “biofabricator”. This is a role that melds technical skills in materials, mechatronics and biology with the clinical sciences.


21st century career

If you need a new body part, it’s the role of the biofabricator to build it for you. The concepts are new, the technology is groundbreaking. And the job description? It’s still being written.

It is a vocation that’s already taking off in the US though. In 2012, Forbes rated biomedical engineering (equivalent to biofabricator) number one on its list of the 15 most valuable college majors. The following year, CNN and payscale.com called it the “best job in America”.

These conclusions were based on things like salary, job satisfaction and job prospects, with the US Bureau of Labour Statistics projecting a massive growth in the number of biomedical engineering jobs over the next ten years.

Meanwhile, Australia is blazing its own trail. As the birthplace of the multi-channel Cochlear implant, Australia already boasts a worldwide reputation in biomedical implants. Recent clinical breakthroughs with an implanted titanium heel and jawbone reinforce Australia’s status as a leader in the field.

The Cochlear implant has brought hearing to many people. Dick Sijtsma/Flickr, CC BY-NC

The Cochlear implant has brought hearing to many people. Dick Sijtsma/Flickr, CC BY-NC

I’ve recently helped establish the world’s first international Masters courses for biofabrication, ready to arm the next generation of biofabricators with the diverse array of skills needed to 3D print parts for bodies.

These skills go beyond the technical; the job also requires the ability to communicate with regulators and work alongside clinicians. The emerging industry is challenging existing business models.


Life as a biofabricator

Day to day, the biofabricator is a vital cog in the research machine. They work with clinicians to create a solution to clinical needs, and with biologists, materials and mechatronic engineers to deliver them.

Biofabricators are naturally versatile. They are able to discuss clinical needs pre-dawn, device physics with an electrical engineer in the morning, stem cell differentiation with a biologist in the afternoon and a potential financier in the evening. Not to mention remaining conscious of regulatory matters and social engagement.

Our research at the ARC Centre of Excellence for Electromaterials Science (ACES) is only made possible through the work of a talented team of biofabricators. They help with the conduits we are building to regrow severed nerves, to the electrical implant designed to sense an imminent epileptic seizure and stop it before it occurs, to the 3D printed cartilage and bone implants fashioned to be a perfect fit at the site of injury.

As the interdisciplinary network takes shape, we see more applications every week. Researchers have only scratched the surface of what is possible for wearable or implanted sensors to keep tabs on an outpatient’s vitals and beam them back to the doctor.

Meanwhile, stem cell technology is developing rapidly. Developing the cells into tissues and organs will require prearrangement of cells in appropriate 3D environments and custom designed bioreactors mimicking the dynamic environment inside the body.

Imagine the ability to arrange stem cells in 3D surrounded by other supporting cells and with growth factors distributed with exquisite precision throughout the structure, and to systematically probe the effect of those arrangements on biological processes. Well, it can already be done.

Those versed in 3D bioprinting will enable these fundamental explorations.


Future visions

Besides academic research, biofabricators will also be invaluable to medical device companies in designing new products and treatments. Those engineers with an entrepreneurial spark will look to start spin-out companies of their own. The more traditional manufacturing business model will not cut it.

As 3D printing evolves, it is becoming obvious that we will require dedicated printing systems for particular clinical applications. The printer in the surgery for cartilage regeneration will be specifically engineered for the task at hand, with only critical variables built into a robust and reliable machine.

The 1970s TV show, Six Million Dollar Man, excited imaginations, but science is rapidly catching up to science fiction. Joe Haupt/Flickr, CC BY-SA

The 1970s TV show, Six Million Dollar Man, excited imaginations, but science is rapidly catching up to science fiction. Joe Haupt/Flickr, CC BY-SA

Appropriately trained individuals will also find roles in the public service, ideally in regulatory bodies or community engagement.

For this job of tomorrow, we must train today and new opportunities are emerging biofab-masters-degree. We must cut across the traditional academic boundaries that slow down such advances. We must engage with the community of traditional manufacturers that have skills that can be built upon for next generation industries.

Australia is also well placed to capitalise on these emerging industries. We have a traditional manufacturing sector that is currently in flux, an extensive advanced materials knowledge base built over decades, a dynamic additive fabrication skills base and a growing alternative business model environment.

– Gordon Wallace & Cathal D. O’Connell

This article was first published by The Conversation on 31 August 2015. Read the original article here.

A new climate of collaboration for ANSTO

Australia’s foremost nuclear science and technology organisation, ANSTO, is a key player in establishing safe practice in the field throughout the Asia-Pacific region. Recently, the organisation has set its sights on growing the scope of its collaborations in Asia.

In December 2012, ANSTO formed a joint research centre with the Shanghai Institute of Applied Physics (SINAP). The centre focuses on developing materials for extreme environments – in particular, structural nuclear materials for advanced Thorium Molten Salt Reactors. Unlike existing reactors, these next-generation reactors can run on waste fuels and they’re less likely to meltdown.

“The type of science we’re undertaking is changing from fundamental research to research goals leading to real-world applications,” says ANSTO research fellow Dr Massey de los Reyes. “For example, the ANSTO-SINAP Joint Research Centre aims to understand how materials behave in extreme environments: fusion, aerospace, nuclear reactors.”

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De los Reyes and colleagues aim to use the knowledge gained in the centre to develop new strategic research partnerships with industry and other organisations, looking at improving existing materials used in thorium reactors or developing entirely new materials for use in extreme environments. “This information could benefit a range of processing and manufacturing industries,” she says.

“The type of science we’re undertaking is changing from fundamental research to research goals leading to real-world applications.”

Eight of ANSTO’s 25 international partnerships have been formed with Asian countries, including Malaysia, Japan, Korea, Indonesia and Taiwan. These collaborations are opening up exciting new avenues of research. For example, the National Science Council Taiwan funded the SIKA neutron beam instrument currently under construction at the Bragg Institute in Sydney.

In the arena of basic research, ANSTO Principal Research Scientist Dr David Fink is collaborating with Mongolian scientists to study the past behaviour of Mongolia’s extensive glaciated mountains. As glaciers shrink and grow, they leave evidence of their tracks in the form of rock piles known as moraines.

Working in Mongolia, and with partners in Asia, is benefitting ANSTO researchers such as Dr Massey de los Reyes

Working in Mongolia, and with partners in Asia, is benefitting ANSTO researchers such as Dr Massey de los Reyes.

Dr Fink visited the region in 2013 with scientists from Israel’s Hebrew University and the University of Washington, US, to collect rocks from glacially-carved valleys in the Gobi Altai Mountains. To work out how long moraines in different areas of a valley have been exposed since the glacier retreated, Fink uses a technique called cosmogenic in situ surface exposure dating.

Using ANSTO’s accelerator mass spectrometer, the scientists can establish how long the rocks have been exposed and, therefore, the extent of past glaciation. These records fill in gaps in glacially-driven global climate change covering a period from a few thousand years to about 100,000 years ago.

Fink and his colleagues have undertaken similar work in China and central Tibet in collaboration with researchers at the Chinese Academy of Science. “It really has revolutionised the way we can quantify landscapes,” says Fink.

www.ansto.gov.au

– Laura Boness

 

 

 

 

Baby immunisation: One in 10 infants at risk

Almost one in 10 Australian infants are at risk of severe infections because they are not up-to-date with their immunisations.

According to new research at the University of Adelaide in South Australia, conducted in conjunction with University College London, children with socio-economically disadvantaged parents, not just parents who disagree with baby immunisation, were more likely to not be fully immunised.

The study examined barriers to childhood immunisations experienced by parents in Australia. Overall researchers found 91% of infants were up-to-date with immunisations.

Associate Professor Helen Marshall, from the University of Adelaide’s Robinson Research Institute, and Director of Vaccinology and Immunology Research Trials Unit at the Women’s and Children’s Hospital, said this is the first Australia-wide study to show that factors associated with social disadvantage impact on immunisation uptake – more than unwillingness to have children immunised.

“In this study we looked at the most current individual-level data available of more than 5000 Australian children, aged 3–19 months,” she says.

She found that 9.3% of children were found to be partially immunised or not immunised at all, and of these only one in six children had parents who disagreed with immunisations.

“So the majority of infants who were incompletely immunised had parents who do not object to immunisation – something else is getting in the way,” she says.

Marshall says the primary barriers to immunisation included minimal contact with, and access to services, being a single parent and children living in a large household.

“Socio-economic disadvantage was an important reason why parents had children who were either partially immunised or not immunised at all,” she says.

“Children with chronic medical conditions were also more likely not to be up-to-date with immunisations. This is possibly due to parents and health care providers having a lack of knowledge about additional vaccines that are recommended for children with certain medical conditions or concerns vaccines may have adverse effects in these children,” she says.

Marshall says these findings can inform programs to increase the uptake of immunisations.

“Reminders and rescheduling of cancelled appointments, and offering immunisation in different settings may help achieve better protection for children and the community,” says Marshall.

“This research found that the majority of parents with partially immunised children are in favour of vaccinations, so we need to look at how we can remove the barriers experienced by these families.”

The research was published in the journal Vaccine.

This article was first published on 6 August 2015 by The Lead Australia. Read the original article here.

Brain teaser: 3D-printed ’tissue’ to help combat disease

The brain is amazingly complex, with around 86 billion nerve cells. The challenge for researchers to create bench-top brain tissue from which they can learn about how the brain functions, is an extremely difficult one.

Researchers at the ARC Centre of Excellence for Electromaterials Science (ACES), based at UOW’s Innovation Campus, have taken a step closer to meeting this challenge, by developing a 3D-printed layered structure incorporating neural cells, that mimics the structure of brain tissue.

The value of bench-top brain tissue is huge. Pharmaceutical companies spend millions of dollars testing therapeutic drugs on animals, only to discover in human trials that the drug has an altogether different level of effectiveness. We’re not sure why, but the human brain differs distinctly from that of an animal.

A bench-top brain that accurately reflects actual brain tissue would be significant for researching not only the effect of drugs, but brain disorders like schizophrenia, and degenerative brain disease.

ACES Director and research author Professor Gordon Wallace (pictured above with Rodrigo Lozano and Elise Stewart) said that the breakthrough is significant progress in the quest to create a bench-top brain that will enable important insights into brain function, in addition to providing an experimental test bed for new drugs and electroceuticals.

“We are still a long way from printing a brain but the ability to arrange cells so as they form neuronal networks is a significant step forward,” says Wallace.

To create their six-layered structure, researchers developed a custom bio-ink containing naturally occurring carbohydrate materials. The custom materials have properties that allow accurate cell dispersion throughout the structure, whilst providing a rare level of protection to the cells.

The bio-ink is then optimised for 3D-printing, and developed for use in a standard cell culturing facility without the need for expensive bio-printing equipment.

The result is a layered structure like brain tissue, in which cells are accurately placed and remain in their designated layer.

“This study highlights the importance of integrating advances in 3D-printing, with those in materials science, to realise a biological outcome,” says Wallace.

“This paves the way for the use of more sophisticated printers to create structures with much finer resolution.”

The research, funded through Wallace’s Australian Laureate Fellowship, is published in Biomaterials

This article was first published on 3 August 2015 by the University of Wollongong. Read the original article here.

Test on chemo drugs predict side effects

A chemosensitivity test hopes to identify which chemo drugs will provide benefit and which may cause unwanted side effects for sarcoma cancer patients.

University of Western Australia’s School of Surgery researchers are currently comparing three methods to identify the most effective and reliable method to grow a patient’s tumour cells.

Co-lead researcher Dr Nicholas Calvert says sarcoma is a group of rare cancers arising from bone, muscle and cartilage.

“While they are rare, they can be very aggressive and early detection is vital to successful treatment, which can involve chemotherapy, radiotherapy, and surgical treatment,” he says.

Calvert says it is difficult to predict tumour responsiveness to chemotherapy because there are over 70 different types of sarcoma with significant variation in the genetic profile of cells within each type.

Chemotherapy in this area is generally guided by research on chemotherapy efficacy on a specific tumour type or those that are similar.

“So successfully predicting whether a patient’s tumour will be similar to another patient’s tumour of the same type is very difficult,” says Calvert.

“Especially given there are only around 1200 new cases per year which does not provide a large enough trial to test different chemotherapy regimens.”


Gene library and cell cultures methods considered

One of the methods under review involves researchers analysing DNA from tumour cells and comparing them to an international library of genes to identify whether they have any mutations that will help or prevent a chemotherapy drug from working.

Another method involves growing tumour cells in the lab and then exposing them to different chemotherapy drugs to see which kill the cells and at what dose.

Finally, mouse xenograft will be considered where tumour cells are grown in lab mice which are then subjected to different chemotherapy drugs to see which kill the cells and at what dose.

Calvert says once this pilot study is completed they will expand it to a national trial to identify which of these tests is effective and reliable to select chemotherapy drugs.

“If we can identify a test that will allow us to take a sample of tumour, and identify how it will respond to chemotherapy it will have significant benefit for not only those with sarcoma but also other cancers,” says Calvert.

He says this ‘personalised medicine’ approach aims to confirm a tumour will respond to an agent before it is even given, and avoid the significant and sometimes life-threatening side effects of some the chemotherapy agents.

Sarcoma has approximately 1200 new cases diagnosed each year in Australia and accounts for approximately 1% of all adult malignancies and 15% of paediatric malignancies.

– Teresa Belcher

This article was originally published on Science Network Western Australia. Read the original article here.

 

A new sunscreen made from fish slime and algae

Researchers have developed a new UV blocking material out of naturally occurring molecules found in algae and fish slime that can be used to make more effective sunscreen, bandages and contact lenses.

Organisms like algae and cyanobacteria have evolved to synthesise their own UV screening compounds, such as mycosporine-like amino acids (MAAs).

MAAs are commonly found in the creatures that eat algae and cyanobacteria as well – tropical fish like those found on the Great Barrier Reef accrue the material in their slime and eyes to protect themselves from harmful UV radiation.

“Mycosporines are present a little bit everywhere, in many types of organisms,” says Professor Vincent Bulone, co-author of the research paper and Director of the ARC Centre of Excellence in Plant Cell Walls at the University of Adelaide.

“We have attached these small UV absorbing molecules in a non-reversible manner to a polymer called chitosan, that you can extract from the shells of shrimp or crabs.”

The result is an all-natural UVA and UVB screening material. Thanks to the versatility of chitosan, it can be used in a cream for topical application, a transparent film for use in materials like bandages, or coated on objects like textiles and outdoor furniture to protect them from UV damage.

Current sunscreen formulas use a combination of materials in order to screen both UVA and UVB radiation, including some that can have a negative effect on health in the long-term, such as titanium dioxide.

“It outperforms some of the compounds that are already used on the market in terms of the UV absorption capacity. The good thing is that it’s completely natural. We’ve also tested them on cell cultures and know they are not toxic,”says Bulone.

“We know, under laboratory conditions, the MAAs have no harmful effects. So they can be used for wound healing dressings for instance. You don’t need to change that dressing as often and it facilitates the healing of the skin.”

The compound is also highly stable, even under high temperatures.

While chitosan is already widely used for many applications and easily extracted from crustacean waste products such as prawn shells, MAAs are more difficult to produce.

“Extracting it from algae would be a very expensive process, but it is possible to produce them by engineering bacteria. This has been since the early 90s. It’s not a cheap process, but it can be done.”

Bulone was recently installed as Director of the ARC Centre of Excellence in Plant Cell Walls at the University of Adelaide in South Australia.

“I’ve only started recently in South Australia. This work was done in my lab in Sweden. I still split my time, 70% in Adelaide and 30% in Sweden.”

Published in ACS Applied Materials & Interfaces, the research was undertaken with colleagues at Sweden’s Royal Institute of Technology. It also involved close collaboration with partners in Spain.

Bulone is actively developing new collaborations within Australia and internationally to develop new concepts leading to increased crop production and quality for nutrition as well as protection of crops against devastating fungal pathogens. These developments rely on his long-standing expertise in the biochemistry of carbohydrates from plant and fungal cell walls.

This article was first published by The Lead on 29 July 2015. Read the original article here.

Curtin University in NASA’s Orbit with new SSERVI deal

Greg Schmidt, Deputy Director of SSERVI and Director of international partnerships (left) and Yvonne Pendleton, Director of NASA’s Solar System Exploration Research Virtual Institute (SSERVI) (middle), join Professor Phil Bland, Principal Investigator at Curtin University in Perth, Australia (right), in signing an international agreement to share scientific and technological expertise in exploration science. Photo Credit: D. Morrison/NASA

NASA and Curtin University, located in Perth, Western Australia, have signed an Affiliate Member statement with NASA’s Solar System Exploration Research Virtual Institute (SSERVI). With the establishment of a NASA SSERVI Australia node, Australia’s planetary science community will participate in SSERVI programs on a no-exchange-of-funds basis.

“Australia’s impressive proposal to SSERVI offers scientific and technological expertise in understanding Solar System origins and evolution, lunar science, meteoritics and small bodies, asteroid differentiation, planetary mission science and technology, regolith processes on asteroids and the Moon, advanced analytical techniques, fireball observations and orbital dynamics, and links with the exoplanet and stellar evolution astrophysical communities. We are eager to see the collaborative scientific discoveries that result from this partnership,” says Yvonne Pendleton, Director of SSERVI.

The proposal submitted by Principal InvestigatorProfessor Phil Bland (Curtin University in Perth) and Deputy Director Dr Marc Norman (Australian National University in Canberra) included colleagues from a number of institutions across the country and represented a wide breadth of expertise from Australia’s planetary science community. The proposal was selected for Affiliate Membership after it was determined that complementary research activities will help NASA achieve its goals for human exploration of the solar system.

“This is a special moment for Australia,” says  Bland, from the Department of Applied Geology at the Curtin WA School of Mines.

“We are confident that this partnership will result in more great scientific discoveries in planetary science for both our our nations, as well as furthering the SSERVI goal of advancing basic and applied lunar and planetary science research and advancing human exploration of the solar system through scientific discovery.”

Curtin University Vice-Chancellor Professor Deborah Terry says the link with NASA was a fantastic opportunity for Curtin’s staff and students to engage with the global leader for space exploration.

“Given Curtin’s existing expertise in radio astronomy and involvement in the ground-breaking international Square Kilometre Array project, the partnership with NASA is a covetable attachment with many benefits,” says Terry.

“Our Australian partners have put together a compelling proposal that outlines multiple topics for potential collaborative research. We look forward to fruitful scientific collaborations, which will include the study of future potential mission concepts. This partnership will be important to NASA and its international partners successfully conducting the ambitious activities of exploring the solar system with robots and humans, and we look forward to a long and close partnership between our respective countries,” says Greg Schmidt, Deputy Director of SSERVI, who also directs international partnerships for the Institute.

“We look forward to fruitful scientific collaborations, which will include the study of future potential mission concepts. This partnership will be important to NASA and its international partners successfully conducting the ambitious activities of exploring the solar system with robots and humans, and we look forward to a long and close partnership between our respective countries.”

This article was first published by Curtin University on 30 July 2015. Read the article here.

Based and managed at NASA’s Ames Research Center in Moffett Field, California, SSERVI is a virtual institute that, together with international partnerships, brings researchers together in a collaborative virtual setting. The virtual institute model enables cross-team and interdisciplinary research that pushes forward the boundaries of science and exploration. SSERVI is funded by the Science Mission Directorate and Human Exploration and Operations Mission Directorate at NASA Headquarters in Washington.

Find more information about SSERVI and selected member teams here.